One of the more telling stats from that game was that Baylor didn't score a point in the final 20 minutes. Clearly the MSU defense was on its heels early, as would anyone against that offense, but they adjusted and shut them down when it mattered. Then again, it was the MSU defense, not typical and much better than most B1G defenses.
one td called back because of a block in the back, defender was never going to catch the ball carrier. It was a beyond dumb penalty but at the same time, it shouldn't have been called because it had nothing to do with the play. A second potential td called back because a baylor receiver accidently grabbed a face mask while stiff arming a defender at the
MSU 5 yard line. If he just goes down or allows himself to get tackled inside the 5, the game is over, MSU has no chance. So Baylor was still moving the ball in that final 20 minutes, they just did not score because of self imposed mistakes, not because MSU adjusted and was stopping them.